Detailed information of SNP:
|
SNP ID:
sf1215411896(Gbrowse)
Chromosome: chr12 Position: 15411896 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 68.83% | 31.17% |
| All Indica | 799 | 71.84% | 28.16% |
| All Japonica | 497 | 77.06% | 22.94% |
| Aus | 66 | 3.03% | 96.97% |
| Indica I | 375 | 79.73% | 20.27% |
| Indica II | 213 | 60.56% | 39.44% |
| Indica Intermediate | 211 | 69.19% | 30.81% |
| Temperate Japonica | 335 | 91.34% | 8.66% |
| Tropical Japonica | 94 | 31.91% | 68.09% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215411896 | G->C | INTERGENIC | None |