Detailed information of SNP:
|
SNP ID:
sf1215417652(Gbrowse)
Chromosome: chr12 Position: 15417652 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1405 | 88.19% | 11.81% |
| All Indica | 795 | 93.08% | 6.92% |
| All Japonica | 487 | 86.24% | 13.76% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 209 | 77.03% | 22.97% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 329 | 96.66% | 3.34% |
| Tropical Japonica | 90 | 50.00% | 50.00% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215417652 | T->G | INTERGENIC | None |