Detailed information of SNP:
|
SNP ID:
sf1215425235(Gbrowse)
Chromosome: chr12 Position: 15425235 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1379 | 55.04% | 44.96% |
| All Indica | 782 | 26.73% | 73.27% |
| All Japonica | 491 | 96.54% | 3.46% |
| Aus | 53 | 75.47% | 24.53% |
| Indica I | 365 | 16.99% | 83.01% |
| Indica II | 208 | 38.46% | 61.54% |
| Indica Intermediate | 209 | 32.06% | 67.94% |
| Temperate Japonica | 333 | 99.10% | 0.90% |
| Tropical Japonica | 92 | 89.13% | 10.87% |
| Japonica Intermediate | 66 | 93.94% | 6.06% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215425235 | A->T | LOC_Os12g26400(LOC_Os12g26400.1) | Non-Synonymous SNP |