Detailed information of SNP:
|
SNP ID:
sf1215432249(Gbrowse)
Chromosome: chr12 Position: 15432249 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1408 | 71.88% | 28.12% |
| All Indica | 788 | 77.54% | 22.46% |
| All Japonica | 497 | 75.25% | 24.75% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 80.00% | 20.00% |
| Indica II | 205 | 73.66% | 26.34% |
| Indica Intermediate | 208 | 76.92% | 23.08% |
| Temperate Japonica | 335 | 91.64% | 8.36% |
| Tropical Japonica | 94 | 21.28% | 78.72% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215432249 | A->G | INTERGENIC | None |