Detailed information of SNP:
|
SNP ID:
sf1215434878(Gbrowse)
Chromosome: chr12 Position: 15434878 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 66.17% | 33.83% |
| All Indica | 794 | 69.27% | 30.73% |
| All Japonica | 495 | 73.13% | 26.87% |
| Aus | 66 | 10.61% | 89.39% |
| Indica I | 374 | 75.13% | 24.87% |
| Indica II | 212 | 63.21% | 36.79% |
| Indica Intermediate | 208 | 64.90% | 35.10% |
| Temperate Japonica | 335 | 91.94% | 8.06% |
| Tropical Japonica | 92 | 8.70% | 91.30% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 34.15% | 65.85% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215434878 | G->A | INTERGENIC | None |