Detailed information of SNP:
|
SNP ID:
sf1215435828(Gbrowse)
Chromosome: chr12 Position: 15435828 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1387 | 94.66% | 5.34% |
| All Indica | 793 | 99.24% | 0.76% |
| All Japonica | 475 | 93.26% | 6.74% |
| Aus | 65 | 66.15% | 33.85% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 208 | 97.60% | 2.40% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 324 | 99.69% | 0.31% |
| Tropical Japonica | 87 | 66.67% | 33.33% |
| Japonica Intermediate | 64 | 96.88% | 3.12% |
| Group VI/Aromatic | 13 | 30.77% | 69.23% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215435828 | G->A | INTERGENIC | None |