Detailed information of SNP:
|
SNP ID:
sf1215441636(Gbrowse)
Chromosome: chr12 Position: 15441636 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 96.93% | 3.07% |
| All Indica | 798 | 98.87% | 1.13% |
| All Japonica | 479 | 95.62% | 4.38% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 322 | 96.58% | 3.42% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 63 | 93.65% | 6.35% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215441636 | C->T | LOC_Os12g26420(LOC_Os12g26420.1) | Synonymous |