Detailed information of SNP:
|
SNP ID:
sf1215442878(Gbrowse)
Chromosome: chr12 Position: 15442878 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1394 | 97.42% | 2.58% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 473 | 95.56% | 4.44% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 322 | 96.27% | 3.73% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 57 | 92.98% | 7.02% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215442878 | G->T | LOC_Os12g26430(LOC_Os12g26430.1) | SNPs that introduce stop codons |