Detailed information of SNP:
|
SNP ID:
sf1215456998(Gbrowse)
Chromosome: chr12 Position: 15456998 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 63.69% | 36.31% |
| All Indica | 795 | 93.58% | 6.42% |
| All Japonica | 492 | 14.43% | 85.57% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 209 | 85.17% | 14.83% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 331 | 3.63% | 96.37% |
| Tropical Japonica | 93 | 45.16% | 54.84% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215456998 | A->G | INTERGENIC | None |