Detailed information of SNP:
|
SNP ID:
sf1215463184(Gbrowse)
Chromosome: chr12 Position: 15463184 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 90.83% | 9.17% |
| All Indica | 793 | 96.34% | 3.66% |
| All Japonica | 495 | 86.46% | 13.54% |
| Aus | 64 | 73.44% | 26.56% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 207 | 87.44% | 12.56% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 92 | 48.91% | 51.09% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215463184 | C->T | INTERGENIC | None |