Detailed information of SNP:
|
SNP ID:
sf1215468531(Gbrowse)
Chromosome: chr12 Position: 15468531 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 89.64% | 10.36% |
| All Indica | 799 | 94.87% | 5.13% |
| All Japonica | 497 | 86.72% | 13.28% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 81.69% | 18.31% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 96.42% | 3.58% |
| Tropical Japonica | 94 | 53.19% | 46.81% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215468531 | C->T | INTERGENIC | None |