Detailed information of SNP:
|
SNP ID:
sf1215471951(Gbrowse)
Chromosome: chr12 Position: 15471951 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1398 | 69.96% | 30.04% |
| All Indica | 793 | 94.83% | 5.17% |
| All Japonica | 485 | 25.15% | 74.85% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 209 | 93.30% | 6.70% |
| Indica Intermediate | 209 | 91.87% | 8.13% |
| Temperate Japonica | 328 | 5.49% | 94.51% |
| Tropical Japonica | 90 | 94.44% | 5.56% |
| Japonica Intermediate | 67 | 28.36% | 71.64% |
| Group VI/Aromatic | 13 | 53.85% | 46.15% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215471951 | T->A | LOC_Os12g26480(LOC_Os12g26480.2) | INTRON |
| sf1215471951 | T->A | LOC_Os12g26480(LOC_Os12g26480.1) | INTRON |