Detailed information of SNP:
|
SNP ID:
sf1215479312(Gbrowse)
Chromosome: chr12 Position: 15479312 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1396 | 65.62% | 34.38% |
| All Indica | 789 | 93.28% | 6.72% |
| All Japonica | 489 | 18.20% | 81.80% |
| Aus | 65 | 73.85% | 26.15% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 207 | 80.68% | 19.32% |
| Indica Intermediate | 207 | 94.20% | 5.80% |
| Temperate Japonica | 334 | 3.89% | 96.11% |
| Tropical Japonica | 87 | 70.11% | 29.89% |
| Japonica Intermediate | 68 | 22.06% | 77.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 76.92% | 23.08% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215479312 | A->C | INTERGENIC | None |