Detailed information of SNP:
|
SNP ID:
sf1215481641(Gbrowse)
Chromosome: chr12 Position: 15481641 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1386 | 95.89% | 4.11% |
| All Indica | 784 | 97.07% | 2.93% |
| All Japonica | 484 | 95.04% | 4.96% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 371 | 96.23% | 3.77% |
| Indica II | 207 | 97.58% | 2.42% |
| Indica Intermediate | 206 | 98.06% | 1.94% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 82 | 79.27% | 20.73% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 13 | 46.15% | 53.85% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215481641 | T->A | LOC_Os12g26490(LOC_Os12g26490.1) | Non-Synonymous SNP |