Detailed information of SNP:
|
SNP ID:
sf1215495997(Gbrowse)
Chromosome: chr12 Position: 15495997 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1384 | 58.82% | 41.18% |
| All Indica | 783 | 78.16% | 21.84% |
| All Japonica | 485 | 22.47% | 77.53% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 365 | 84.38% | 15.62% |
| Indica II | 208 | 77.40% | 22.60% |
| Indica Intermediate | 210 | 68.10% | 31.90% |
| Temperate Japonica | 331 | 3.02% | 96.98% |
| Tropical Japonica | 86 | 89.53% | 10.47% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 10 | 100.00% | 0.00% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215495997 | T->G | INTERGENIC | None |