Detailed information of SNP:
|
SNP ID:
sf1215511321(Gbrowse)
Chromosome: chr12 Position: 15511321 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 98.01% | 1.99% |
| All Indica | 796 | 98.99% | 1.01% |
| All Japonica | 493 | 97.77% | 2.23% |
| Aus | 63 | 90.48% | 9.52% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 211 | 98.58% | 1.42% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 92 | 91.30% | 8.70% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215511321 | C->T | LOC_Os12g26550(LOC_Os12g26550.1) | Synonymous |