Detailed information of SNP:
|
SNP ID:
sf1215513235(Gbrowse)
Chromosome: chr12 Position: 15513235 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1394 | 59.97% | 40.03% |
| All Indica | 774 | 31.78% | 68.22% |
| All Japonica | 497 | 97.38% | 2.62% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 360 | 12.22% | 87.78% |
| Indica II | 211 | 66.82% | 33.18% |
| Indica Intermediate | 203 | 30.05% | 69.95% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215513235 | G->T | LOC_Os12g26550(LOC_Os12g26550.1) | Non-Synonymous SNP |