Detailed information of SNP:
|
SNP ID:
sf1215517402(Gbrowse)
Chromosome: chr12 Position: 15517402 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 50.11% | 49.89% |
| All Indica | 796 | 26.13% | 73.87% |
| All Japonica | 496 | 90.32% | 9.68% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 375 | 4.53% | 95.47% |
| Indica II | 212 | 67.92% | 32.08% |
| Indica Intermediate | 209 | 22.49% | 77.51% |
| Temperate Japonica | 334 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 71.28% | 28.72% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215517402 | G->T | INTERGENIC | None |