Detailed information of SNP:
|
SNP ID:
sf1215524538(Gbrowse)
Chromosome: chr12 Position: 15524538 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 86.39% | 13.61% |
| All Indica | 798 | 86.84% | 13.16% |
| All Japonica | 497 | 91.95% | 8.05% |
| Aus | 67 | 43.28% | 56.72% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 63.38% | 36.62% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 69.15% | 30.85% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215524538 | A->C | LOC_Os12g26560(LOC_Os12g26560.1) | INTRON |