Detailed information of SNP:
|
SNP ID:
sf1215543949(Gbrowse)
Chromosome: chr12 Position: 15543949 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1383 | 64.35% | 35.65% |
| All Indica | 774 | 91.09% | 8.91% |
| All Japonica | 491 | 19.96% | 80.04% |
| Aus | 66 | 78.79% | 21.21% |
| Indica I | 360 | 92.22% | 7.78% |
| Indica II | 209 | 90.91% | 9.09% |
| Indica Intermediate | 205 | 89.27% | 10.73% |
| Temperate Japonica | 335 | 5.37% | 94.63% |
| Tropical Japonica | 89 | 73.03% | 26.97% |
| Japonica Intermediate | 67 | 22.39% | 77.61% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 38 | 71.05% | 28.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215543949 | T->C | INTERGENIC | None |