Detailed information of SNP:
|
SNP ID:
sf1215545772(Gbrowse)
Chromosome: chr12 Position: 15545772 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1401 | 61.67% | 38.33% |
| All Indica | 789 | 94.04% | 5.96% |
| All Japonica | 491 | 14.26% | 85.74% |
| Aus | 66 | 33.33% | 66.67% |
| Indica I | 370 | 95.95% | 4.05% |
| Indica II | 212 | 94.81% | 5.19% |
| Indica Intermediate | 207 | 89.86% | 10.14% |
| Temperate Japonica | 335 | 5.37% | 94.63% |
| Tropical Japonica | 90 | 48.89% | 51.11% |
| Japonica Intermediate | 66 | 12.12% | 87.88% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215545772 | G->A | LOC_Os12g26570(LOC_Os12g26570.1) | INTRON |