Detailed information of SNP:
|
SNP ID:
sf1215548885(Gbrowse)
Chromosome: chr12 Position: 15548885 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1326 | 63.12% | 36.88% |
| All Indica | 774 | 91.99% | 8.01% |
| All Japonica | 461 | 12.36% | 87.64% |
| Aus | 44 | 84.09% | 15.91% |
| Indica I | 364 | 94.51% | 5.49% |
| Indica II | 207 | 92.27% | 7.73% |
| Indica Intermediate | 203 | 87.19% | 12.81% |
| Temperate Japonica | 333 | 6.61% | 93.39% |
| Tropical Japonica | 68 | 38.24% | 61.76% |
| Japonica Intermediate | 60 | 15.00% | 85.00% |
| Group VI/Aromatic | 12 | 50.00% | 50.00% |
| Intermediate | 35 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215548885 | T->C | LOC_Os12g26580(LOC_Os12g26580.1) | INTRON |