Detailed information of SNP:
|
SNP ID:
sf1215549020(Gbrowse)
Chromosome: chr12 Position: 15549020 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 67.83% | 32.17% |
| All Indica | 794 | 94.46% | 5.54% |
| All Japonica | 493 | 21.30% | 78.70% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 374 | 98.13% | 1.87% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 207 | 89.37% | 10.63% |
| Temperate Japonica | 334 | 5.09% | 94.91% |
| Tropical Japonica | 93 | 79.57% | 20.43% |
| Japonica Intermediate | 66 | 21.21% | 78.79% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215549020 | A->G | LOC_Os12g26580(LOC_Os12g26580.1) | INTRON |