Detailed information of SNP:
|
SNP ID:
sf1215550892(Gbrowse)
Chromosome: chr12 Position: 15550892 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 64.90% | 35.10% |
| All Indica | 790 | 93.04% | 6.96% |
| All Japonica | 488 | 15.78% | 84.22% |
| Aus | 65 | 90.77% | 9.23% |
| Indica I | 373 | 97.32% | 2.68% |
| Indica II | 210 | 92.38% | 7.62% |
| Indica Intermediate | 207 | 85.99% | 14.01% |
| Temperate Japonica | 334 | 5.09% | 94.91% |
| Tropical Japonica | 90 | 52.22% | 47.78% |
| Japonica Intermediate | 64 | 20.31% | 79.69% |
| Group VI/Aromatic | 12 | 58.33% | 41.67% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215550892 | T->C | LOC_Os12g26580(LOC_Os12g26580.1) | Non-Synonymous SNP |