Detailed information of SNP:
|
SNP ID:
sf1215552196(Gbrowse)
Chromosome: chr12 Position: 15552196 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1358 | 97.64% | 2.36% |
| All Indica | 745 | 95.97% | 4.03% |
| All Japonica | 493 | 99.59% | 0.41% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 354 | 93.22% | 6.78% |
| Indica II | 200 | 99.00% | 1.00% |
| Indica Intermediate | 191 | 97.91% | 2.09% |
| Temperate Japonica | 331 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215552196 | C->T | LOC_Os12g26580(LOC_Os12g26580.1) | INTRON |