Detailed information of SNP:
|
SNP ID:
sf1215553739(Gbrowse)
Chromosome: chr12 Position: 15553739 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1293 | 91.96% | 8.04% |
| All Indica | 674 | 85.16% | 14.84% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 294 | 79.25% | 20.75% |
| Indica II | 200 | 95.00% | 5.00% |
| Indica Intermediate | 180 | 83.89% | 16.11% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215553739 | C->G | INTERGENIC | None |