Detailed information of SNP:
|
SNP ID:
sf1215555393(Gbrowse)
Chromosome: chr12 Position: 15555393 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 66.43% | 33.57% |
| All Indica | 792 | 95.96% | 4.04% |
| All Japonica | 491 | 15.48% | 84.52% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 210 | 92.86% | 7.14% |
| Indica Intermediate | 207 | 92.75% | 7.25% |
| Temperate Japonica | 335 | 5.07% | 94.93% |
| Tropical Japonica | 92 | 50.00% | 50.00% |
| Japonica Intermediate | 64 | 20.31% | 79.69% |
| Group VI/Aromatic | 13 | 61.54% | 38.46% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215555393 | T->G | INTERGENIC | None |