Detailed information of SNP:
|
SNP ID:
sf1215560940(Gbrowse)
Chromosome: chr12 Position: 15560940 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1403 | 70.28% | 29.72% |
| All Indica | 796 | 97.36% | 2.64% |
| All Japonica | 489 | 22.09% | 77.91% |
| Aus | 64 | 95.31% | 4.69% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 211 | 96.21% | 3.79% |
| Indica Intermediate | 210 | 94.29% | 5.71% |
| Temperate Japonica | 334 | 6.29% | 93.71% |
| Tropical Japonica | 88 | 79.55% | 20.45% |
| Japonica Intermediate | 67 | 25.37% | 74.63% |
| Group VI/Aromatic | 13 | 69.23% | 30.77% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215560940 | G->T | INTERGENIC | None |