Detailed information of SNP:
|
SNP ID:
sf1215564003(Gbrowse)
Chromosome: chr12 Position: 15564003 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 57.66% | 42.34% |
| All Indica | 798 | 85.34% | 14.66% |
| All Japonica | 493 | 16.02% | 83.98% |
| Aus | 65 | 35.38% | 64.62% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 212 | 60.85% | 39.15% |
| Indica Intermediate | 211 | 84.83% | 15.17% |
| Temperate Japonica | 333 | 4.80% | 95.20% |
| Tropical Japonica | 92 | 55.43% | 44.57% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215564003 | T->A | INTERGENIC | None |