Detailed information of SNP:
|
SNP ID:
sf1215578935(Gbrowse)
Chromosome: chr12 Position: 15578935 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1294 | 64.76% | 35.24% |
| All Indica | 706 | 85.41% | 14.59% |
| All Japonica | 472 | 27.54% | 72.46% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 337 | 90.50% | 9.50% |
| Indica II | 182 | 81.32% | 18.68% |
| Indica Intermediate | 187 | 80.21% | 19.79% |
| Temperate Japonica | 320 | 9.38% | 90.62% |
| Tropical Japonica | 88 | 89.77% | 10.23% |
| Japonica Intermediate | 64 | 32.81% | 67.19% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 37 | 75.68% | 24.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215578935 | G->A | LOC_Os12g26610(LOC_Os12g26610.1) | Synonymous |