Detailed information of SNP:
|
SNP ID:
sf1215579358(Gbrowse)
Chromosome: chr12 Position: 15579358 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1405 | 96.58% | 3.42% |
| All Indica | 798 | 99.62% | 0.38% |
| All Japonica | 486 | 93.21% | 6.79% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 86 | 65.12% | 34.88% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 12 | 25.00% | 75.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215579358 | T->C | LOC_Os12g26610(LOC_Os12g26610.1) | Synonymous |