Detailed information of SNP:
|
SNP ID:
sf1215579384(Gbrowse)
Chromosome: chr12 Position: 15579384 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1405 | 95.44% | 4.56% |
| All Indica | 798 | 98.25% | 1.75% |
| All Japonica | 487 | 92.20% | 7.80% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 87 | 59.77% | 40.23% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 12 | 25.00% | 75.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215579384 | A->G | LOC_Os12g26610(LOC_Os12g26610.1) | Non-Synonymous SNP |