Detailed information of SNP:
|
SNP ID:
sf1215579807(Gbrowse)
Chromosome: chr12 Position: 15579807 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 95.82% | 4.18% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 490 | 91.43% | 8.57% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 89 | 59.55% | 40.45% |
| Japonica Intermediate | 67 | 92.54% | 7.46% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215579807 | T->G | LOC_Os12g26610(LOC_Os12g26610.1) | Synonymous |