Detailed information of SNP:
|
SNP ID:
sf1215603855(Gbrowse)
Chromosome: chr12 Position: 15603855 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1388 | 69.16% | 30.84% |
| All Indica | 779 | 95.76% | 4.24% |
| All Japonica | 489 | 22.29% | 77.71% |
| Aus | 65 | 95.38% | 4.62% |
| Indica I | 365 | 97.81% | 2.19% |
| Indica II | 208 | 96.15% | 3.85% |
| Indica Intermediate | 206 | 91.75% | 8.25% |
| Temperate Japonica | 332 | 5.12% | 94.88% |
| Tropical Japonica | 89 | 82.02% | 17.98% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215603855 | G->T | LOC_Os12g26640(LOC_Os12g26640.1) | Non-Synonymous SNP |