Detailed information of SNP:
|
SNP ID:
sf1215606611(Gbrowse)
Chromosome: chr12 Position: 15606611 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1389 | 95.18% | 4.82% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 468 | 86.32% | 13.68% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 312 | 84.62% | 15.38% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 62 | 77.42% | 22.58% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215606611 | C->T | LOC_Os12g26640(LOC_Os12g26640.1) | Non-Synonymous SNP |