Detailed information of SNP:
|
SNP ID:
sf1215606643(Gbrowse)
Chromosome: chr12 Position: 15606643 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1394 | 56.74% | 43.26% |
| All Indica | 782 | 83.50% | 16.50% |
| All Japonica | 495 | 11.52% | 88.48% |
| Aus | 64 | 84.38% | 15.62% |
| Indica I | 371 | 89.22% | 10.78% |
| Indica II | 206 | 82.52% | 17.48% |
| Indica Intermediate | 205 | 74.15% | 25.85% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 93 | 40.86% | 59.14% |
| Japonica Intermediate | 67 | 19.40% | 80.60% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 39 | 51.28% | 48.72% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215606643 | T->C | LOC_Os12g26640(LOC_Os12g26640.1) | Synonymous |