Detailed information of SNP:
|
SNP ID:
sf1215606668(Gbrowse)
Chromosome: chr12 Position: 15606668 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1389 | 56.88% | 43.12% |
| All Indica | 775 | 83.48% | 16.52% |
| All Japonica | 494 | 11.74% | 88.26% |
| Aus | 65 | 86.15% | 13.85% |
| Indica I | 367 | 89.10% | 10.90% |
| Indica II | 203 | 84.73% | 15.27% |
| Indica Intermediate | 205 | 72.20% | 27.80% |
| Temperate Japonica | 334 | 2.10% | 97.90% |
| Tropical Japonica | 93 | 40.86% | 59.14% |
| Japonica Intermediate | 67 | 19.40% | 80.60% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215606668 | C->T | LOC_Os12g26640(LOC_Os12g26640.1) | Non-Synonymous SNP |