Detailed information of SNP:
|
SNP ID:
sf1215606877(Gbrowse)
Chromosome: chr12 Position: 15606877 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1398 | 61.09% | 38.91% |
| All Indica | 785 | 87.13% | 12.87% |
| All Japonica | 493 | 16.63% | 83.37% |
| Aus | 65 | 86.15% | 13.85% |
| Indica I | 373 | 90.35% | 9.65% |
| Indica II | 206 | 88.83% | 11.17% |
| Indica Intermediate | 206 | 79.61% | 20.39% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 92 | 66.30% | 33.70% |
| Japonica Intermediate | 66 | 19.70% | 80.30% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215606877 | C->A | INTERGENIC | None |