Detailed information of SNP:
|
SNP ID:
sf1215608265(Gbrowse)
Chromosome: chr12 Position: 15608265 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1345 | 53.31% | 46.69% |
| All Indica | 742 | 30.46% | 69.54% |
| All Japonica | 483 | 90.27% | 9.73% |
| Aus | 66 | 31.82% | 68.18% |
| Indica I | 339 | 20.94% | 79.06% |
| Indica II | 206 | 41.75% | 58.25% |
| Indica Intermediate | 197 | 35.03% | 64.97% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 81 | 58.02% | 41.98% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215608265 | T->C | INTERGENIC | None |