Detailed information of SNP:
|
SNP ID:
sf1215612444(Gbrowse)
Chromosome: chr12 Position: 15612444 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1393 | 64.54% | 35.46% |
| All Indica | 792 | 94.82% | 5.18% |
| All Japonica | 481 | 12.89% | 87.11% |
| Aus | 66 | 80.30% | 19.70% |
| Indica I | 372 | 97.85% | 2.15% |
| Indica II | 209 | 94.26% | 5.74% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 329 | 3.04% | 96.96% |
| Tropical Japonica | 89 | 44.94% | 55.06% |
| Japonica Intermediate | 63 | 19.05% | 80.95% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215612444 | T->A | INTERGENIC | None |