Detailed information of SNP:
|
SNP ID:
sf1215623873(Gbrowse)
Chromosome: chr12 Position: 15623873 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 92.80% | 7.20% |
| All Indica | 797 | 92.72% | 7.28% |
| All Japonica | 497 | 95.57% | 4.43% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 374 | 98.66% | 1.34% |
| Indica II | 212 | 77.83% | 22.17% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215623873 | G->T | LOC_Os12g26660(LOC_Os12g26660.1) | Non-Synonymous SNP |