Detailed information of SNP:
|
SNP ID:
sf1215626686(Gbrowse)
Chromosome: chr12 Position: 15626686 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 85.42% | 14.58% |
| All Indica | 796 | 91.96% | 8.04% |
| All Japonica | 497 | 80.89% | 19.11% |
| Aus | 65 | 63.08% | 36.92% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 210 | 73.81% | 26.19% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 93.43% | 6.57% |
| Tropical Japonica | 94 | 34.04% | 65.96% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215626686 | T->C | INTERGENIC | None |