Detailed information of SNP:
|
SNP ID:
sf1215627474(Gbrowse)
Chromosome: chr12 Position: 15627474 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1334 | 79.39% | 20.61% |
| All Indica | 738 | 66.26% | 33.74% |
| All Japonica | 492 | 99.19% | 0.81% |
| Aus | 51 | 70.59% | 29.41% |
| Indica I | 354 | 68.64% | 31.36% |
| Indica II | 190 | 63.16% | 36.84% |
| Indica Intermediate | 194 | 64.95% | 35.05% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 65 | 98.46% | 1.54% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215627474 | T->C | INTERGENIC | None |