Detailed information of SNP:
|
SNP ID:
sf1215629866(Gbrowse)
Chromosome: chr12 Position: 15629866 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1347 | 95.55% | 4.45% |
| All Indica | 777 | 96.78% | 3.22% |
| All Japonica | 459 | 97.17% | 2.83% |
| Aus | 64 | 75.00% | 25.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 191 | 89.01% | 10.99% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 323 | 98.76% | 1.24% |
| Tropical Japonica | 75 | 90.67% | 9.33% |
| Japonica Intermediate | 61 | 96.72% | 3.28% |
| Group VI/Aromatic | 11 | 63.64% | 36.36% |
| Intermediate | 36 | 94.44% | 5.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215629866 | G->A | INTERGENIC | None |