Detailed information of SNP:
|
SNP ID:
sf1215632213(Gbrowse)
Chromosome: chr12 Position: 15632213 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 92.15% | 7.85% |
| All Indica | 794 | 98.11% | 1.89% |
| All Japonica | 497 | 85.71% | 14.29% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 208 | 98.56% | 1.44% |
| Temperate Japonica | 335 | 93.73% | 6.27% |
| Tropical Japonica | 94 | 58.51% | 41.49% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215632213 | C->T | INTERGENIC | None |