Detailed information of SNP:
|
SNP ID:
sf1215636076(Gbrowse)
Chromosome: chr12 Position: 15636076 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 97.37% | 2.63% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 487 | 95.89% | 4.11% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 84 | 79.76% | 20.24% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215636076 | C->T | INTERGENIC | None |