Detailed information of SNP:
|
SNP ID:
sf1215643742(Gbrowse)
Chromosome: chr12 Position: 15643742 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 88.14% | 11.86% |
| All Indica | 797 | 92.47% | 7.53% |
| All Japonica | 496 | 86.49% | 13.51% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 212 | 75.94% | 24.06% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 335 | 93.73% | 6.27% |
| Tropical Japonica | 93 | 62.37% | 37.63% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215643742 | C->T | LOC_Os12g26700(LOC_Os12g26700.1) | Non-Synonymous SNP |