Detailed information of SNP:
|
SNP ID:
sf1215644827(Gbrowse)
Chromosome: chr12 Position: 15644827 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1388 | 65.20% | 34.80% |
| All Indica | 776 | 88.27% | 11.73% |
| All Japonica | 494 | 23.48% | 76.52% |
| Aus | 65 | 92.31% | 7.69% |
| Indica I | 361 | 88.64% | 11.36% |
| Indica II | 208 | 91.35% | 8.65% |
| Indica Intermediate | 207 | 84.54% | 15.46% |
| Temperate Japonica | 334 | 6.89% | 93.11% |
| Tropical Japonica | 92 | 83.70% | 16.30% |
| Japonica Intermediate | 68 | 23.53% | 76.47% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215644827 | A->T | INTERGENIC | None |