Detailed information of SNP:
|
SNP ID:
sf1215648558(Gbrowse)
Chromosome: chr12 Position: 15648558 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1372 | 68.80% | 31.20% |
| All Indica | 762 | 65.62% | 34.38% |
| All Japonica | 494 | 79.15% | 20.85% |
| Aus | 62 | 45.16% | 54.84% |
| Indica I | 356 | 72.19% | 27.81% |
| Indica II | 208 | 50.00% | 50.00% |
| Indica Intermediate | 198 | 70.20% | 29.80% |
| Temperate Japonica | 335 | 93.73% | 6.27% |
| Tropical Japonica | 91 | 24.18% | 75.82% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215648558 | T->A | LOC_Os12g26710(LOC_Os12g26710.1) | INTRON |