Detailed information of SNP:
|
SNP ID:
sf1215648672(Gbrowse)
Chromosome: chr12 Position: 15648672 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 91.33% | 8.67% |
| All Indica | 799 | 96.37% | 3.63% |
| All Japonica | 496 | 85.89% | 14.11% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 334 | 94.31% | 5.69% |
| Tropical Japonica | 94 | 57.45% | 42.55% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215648672 | G->C | LOC_Os12g26710(LOC_Os12g26710.1) | Non-Synonymous SNP |